# Gene Structure Survival using Topological Data Analysis

## Documentation for package ‘GSSTDA’ version 0.1.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

case_tag | Case-control vector
check_arg_mapper | check_arg_mapper
check_filter_values | check_filter_values
check_full_data | check_full_data
check_gene_selection | check_gene_selection
check_vectors | check_vectors
clust_all_levels | Get clusters for all data level
clust_lev | Get clusters for a particular data level
compute_node_adjacency | Computes the adjacency matrix.
cox_all_genes | Survival analysis based on gene expression levels.
denoise_rectangular_matrix | Rectangular Matrix Denoiser.
DGSA | Disease-Specific Genomic Analysis
flatten_normal_tiss | Flatten normal tissues
full_data | Gene expression matrix
fun_to_int | Marcenko-Pastur distribution to integrate.
generate_disease_component | Generate disease component matrix.
geneSelection | Gene selection and filter function
geneSelection.default | gene_selection_classes.default
geneSelection.DGSA_object | gene_selection_classes.DGSA_object
gene_selection | gene_selection
gene_selection_surv | Gene selection based on variability and the relationship to survival.
get_intervals_One_D | Extract intervals from filter function output values.
get_lambda | Computes lambda
get_mu_beta | Get mu sub beta
get_omega | Compute the omega value
GSSTDA | Gene Structure Survival using Topological Data Analysis (GSSTDA).
levels_to_nodes | Extract Information about Nodes
lp_norm_k_powers_surv | Filtering function
mapper | Mapper object
map_to_color | Map to color
one_D_Mapper | one_D_Mapper
plot_DGSA | plot DGSA
plot_mapper | Plot mapper
results_DGSA | results DGSA
samples_in_levels | Samples in levels
survival_event | Survival event vector
survival_time | Survival time vector