# Informative Procrustean Matrix Correlation

## Documentation for package ‘ProcMod’ version 1.0.8

- DESCRIPTION file.

## Help Pages

.getPermuteMatrix | Generate permutation matrix according to a schema.
.procmod_coerce_value | Internal function coercing the data to a matrix.
.rep_matrix | Internal function repeating a matrix.
.Trace | Compute the trace of a square matrix.
as.data.frame.dist | Converts a 'dist' object to a 'data.frame' object.
as_procmod_frame | Coerce to a ProcMod Frame.
as_procmod_frame.array | Coerce to a ProcMod Frame.
as_procmod_frame.list | Coerce to a ProcMod Frame.
as_procmod_frame.matrix | Coerce to a ProcMod Frame.
as_procmod_frame.procmod_frame | Coerce to a ProcMod Frame.
bacteria | DNA metabarcoding Australia South-North Gradient
bicenter | Double centering of a matrix.
climat | DNA metabarcoding Australia South-North Gradient
corls | Procrustean Correlation, and Variance / Covariance Matrices.
corls_test | Monte-Carlo Test on the sum of the singular values of a procustean rotation.
dim.procmod_frame | Dimensions of a ProcMod Frame.
eukaryotes | DNA metabarcoding Australia South-North Gradient
geography | DNA metabarcoding Australia South-North Gradient
is_euclid | Test if the distance matrix is euclidean.
is_procmod_frame | Check if an object is a ProcMod Frame.
names.procmod_corls | The Names of the elements of a Correlation Matrix
names.procmod_varls | The Names of the elements of a Variance / Covariance Matrix.
nmds | Project a distance matrix in a euclidean space (NMDS).
ortho | Project a dataset in a euclidean space.
ortho.data.frame | Project a dataset in a euclidean space.
ortho.dist | Project a dataset in a euclidean space.
ortho.matrix | Project a dataset in a euclidean space.
ortho.procmod_frame | Project a dataset in a euclidean space.
pca | Project a set of points in a euclidean space (PCA).
pcoa | Project a distance matrix in a euclidean space (PCOA).
print.procmod_corls | Print a procrustean Correlation Matrix.
print.procmod_varls | Print procrustean Variance / Covariance Matrix.
procmod | Informative Procrustean Matrix Correlation
procmod_frame | The procmod_frame data structure.
protate | Rotate the 'src' matrix to fit into the space of the 'dest' matrix.
simulate_correlation | Simulate n points of dimension p correlated to a reference matrix.
simulate_matrix | Simulate n points of dimension p.
soil | DNA metabarcoding Australia South-North Gradient
subset.procmod_frame | Subsetting Procmod Frames
varls | Procrustean Correlation, and Variance / Covariance Matrices.