# Knockoffs for Hidden Markov Models and Genetic Data

## Documentation for package ‘SNPknock’ version 0.8.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

knockoffDMC | Group knockoffs of discrete Markov chains
knockoffGenotypes | Group-knockoffs of unphased genotypes
knockoffHaplotypes | Group-knockoffs of phased haplotypes
knockoffHMM | Group knockoffs of hidden Markov models
loadHMM | Load HMM parameters fitted by fastPHASE
runFastPhase | Fit an HMM to genetic data using fastPHASE
sampleDMC | Sample discrete Markov chains
sampleHMM | Sample hidden Markov models
writeXtoInp | Convert genotypes X into the fastPHASE input format