# Estimating Plant Pathogen Epidemiology Parameters from Laboratory Assays

## Documentation for package ‘EpiPvr’ version 0.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

AP_assay_simulator | Main function for AP assay simulation
ap_data_sim_PT | Simulated access period experiment Data for a hypothetical PT virus
ap_data_sim_SPT | Simulated access period experiment Data for a hypothetical SPT virus
calculate_epidemic_probability | Main function for calculating epidemic probability
estimate_virus_parameters_PT | Estimate PT virus parameters using Bayesian inference with rstan
estimate_virus_parameters_SPT | Estimate SPT virus parameters using Bayesian inference with rstan