Modeling Longitudinal Antibody Responses to Infection

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Documentation for package ‘serodynamics’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as_case_data	Convert data into 'case_data'
autoplot.case_data	Plot case data
initsfunction	JAGS chain initialization function
load_data	load and format data
nepal_sees	SEES Typhoid data
nepal_sees_jags_output	SEES Typhoid run_mod jags output
plot_jags_dens	Density Plot Diagnostics
plot_jags_effect	Plot Effective Sample Size Diagnostics
plot_jags_Rhat	Rhat Plot Diagnostics
plot_jags_trace	Trace Plot Diagnostics
plot_predicted_curve	Generate Predicted Antibody Response Curves (Median + 95% CI)
postprocess_jags_output	Postprocess JAGS output
post_summ	Summary Table of Jags Posterior Estimates
prep_data	prepare data for JAGs
prep_priors	Prepare priors
run_mod	Run Jags Model
serodynamics_example	Get path to an example file
sim_case_data	Simulate longitudinal case follow-up data from a homogeneous population