Package: AMDconfigurations
Type: Package
Title: Geometric Analysis of Configurations in High-Dimensional Spaces
Version: 0.1.0
Authors@R: person("Manuel", "Mendoza", role = c("aut", "cre"),
  email = "mmendoza@mncn.csic.es",
  comment = c(ORCID = "0000-0002-2143-8138"))
Description: Tools for analysing the geometry of configurations in high-dimensional
    spaces using the Average Membership Degree (AMD) framework and synthetic
    configuration generation. The package supports a domain-agnostic approach
    to studying the shape, dispersion, and internal structure of point clouds,
    with applications across biological and ecological datasets, including
    those derived from deep-time records. The AMD framework builds on the idea
    that strongly coupled systems may occupy a limited set of recurrent regimes
    in state space, producing high-occupancy regions separated by sparsely
    populated transitional configurations. The package focuses on detecting
    these concentration patterns and quantifying their geometric definition
    without assuming any underlying dynamical model. It provides AMD curve
    computation, cluster assignment, and sigma-equivalent estimation, together
    with S3 methods for plotting, printing, and summarising AMD and
    sigma-equivalent objects. Mendoza (2025) <https://mmendoza1967.github.io/AMDconfigurations/>.
License: MIT + file LICENSE
URL: https://github.com/mmendoza1967/AMDconfigurations,
        https://mmendoza1967.github.io/AMDconfigurations/
BugReports: https://github.com/mmendoza1967/AMDconfigurations/issues
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.1)
Imports: e1071, stats
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, pkgdown
VignetteBuilder: knitr
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-03-12 04:30:56 UTC; Manuel Mendoza
Author: Manuel Mendoza [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2143-8138>)
Maintainer: Manuel Mendoza <mmendoza@mncn.csic.es>
Repository: CRAN
Date/Publication: 2026-03-17 18:10:03 UTC
Built: R 4.4.3; ; 2026-03-19 01:05:15 UTC; unix
