# Bayesian Analysis of Significantly Mutated Genes in Cancer

## Documentation for package ‘BaySIC’ version 1.0

- DESCRIPTION file.

## Help Pages

BaySIC-package | Bayesian Analysis of Significantly Mutated Genes in Cancer
BaySIC | Bayesian Analysis of Significantly Mutated Genes in Cancer
baysic.data | Organizes data for BaySIC functions
baysic.fit | Fits BaySIC BMR model
baysic.test | BaySIC Evaluation of SMGs
BMR.plot | Visualize Sequence Context BMRs
ccds.18 | CCDS Reference Data (Build hg18)
ccds.19 | CCDS Reference Data (Build hg19)
example.dat | Example Mutation Data (Build hg19)
fn.cat | Collapses SNV and reference data into sequence mutation categories
fuzzy.FDR.approx | Generate Approximate Fuzzy Rejection Probabilites
revcomp | DNA Reverse Complementation
write.baysic | Write BaySIC JAGS model files