# Computation of Bayes Factors for Common Designs

## Documentation for package ‘BayesFactor’ version 0.9.12-4.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

BayesFactor-package | Functions to compute Bayes factor hypothesis tests for common research designs and hypotheses.
%same% | Compare two objects to see if they are the 'same', for some loose definition of same
%termin% | Find a model term in a vector of model terms
*-method | General S4 class for representing multiple Bayes factor model comparisons, all against the same model
*-method | General S4 class for representing multiple odds model comparisons, all against the same model
--method | General S4 class for representing multiple model probability comparisons
/-method | General S4 class for representing multiple Bayes factor model comparisons, all against the same model
/-method | General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
/-method | General S4 class for representing multiple odds model comparisons, all against the same model
/-method | General S4 class for representing multiple model probability comparisons
anovaBF | Function to compute Bayes factors for ANOVA designs
as.BFBayesFactor | Function to coerce objects to the BFBayesFactor class
as.BFprobability | Function to coerce objects to the BFprobability class
BayesFactor | Functions to compute Bayes factor hypothesis tests for common research designs and hypotheses.
BFBayesFactor-class | General S4 class for representing multiple Bayes factor model comparisons, all against the same model
BFBayesFactorList-class | General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
BFBayesFactorTop-class | General S4 class for representing multiple Bayes factor model comparisons, all against the same model
BFcontingencyTable-class | General S4 classes for representing models for comparison
BFcorrelation-class | General S4 classes for representing models for comparison
BFindepSample-class | General S4 classes for representing models for comparison
BFInfo | Prints the version information for the BayesFactor package
BFlinearModel-class | General S4 classes for representing models for comparison
BFManual | Opens the HTML manual for the BayesFactor package
BFmodel-class | General S4 classes for representing models for comparison
BFodds-class | General S4 class for representing multiple odds model comparisons, all against the same model
BFoneSample-class | General S4 classes for representing models for comparison
BFprobability-class | General S4 class for representing multiple model probability comparisons
BFproportion-class | General S4 classes for representing models for comparison
compare | Compare two models, with respect to some data
compare-method | Compare two models, with respect to some data
contingencyTableBF | Function for Bayesian analysis of one- and two-sample designs
correlationBF | Function for Bayesian analysis of correlations
extractBF | Extract the Bayes factor from an object
extractBF-method | Extract the Bayes factor from an object
extractOdds | Extract the odds from an object
extractOdds-method | Extract the odds from an object
extractProbabilities | Extract the probabilities from an object
extractProbabilities-method | Extract the probabilities from an object
filterBF | Filter the elements of an object according to some pre-specified criteria
filterBF-method | General S4 class for representing multiple model probability comparisons
generalTestBF | Function to compute Bayes factors for general designs
is.na-method | General S4 class for representing multiple Bayes factor model comparisons, all against the same model
linearReg.R2stat | Use R^2 statistic to compute Bayes factor for regression designs
lmBF | Function to compute Bayes factors for specific linear models
logCumMeanExpLogs | Functions to compute the logarithm of the mean (and cumulative means) of vectors of logarithms
logMeanExpLogs | Functions to compute the logarithm of the mean (and cumulative means) of vectors of logarithms
logSummaryStats | Functions to compute the logarithm of the mean (and cumulative means) of vectors of logarithms
meta.ttestBF | Function for Bayesian analysis of one- and two-sample designs
model.matrix,BFBayesFactor | Design matrices for Bayes factor linear models analyses.
model.matrix-method | Design matrices for Bayes factor linear models analyses.
newPriorOdds | Create prior odds from a Bayes factor object
nWayAOV | Use ANOVA design matrix to compute Bayes factors or sample posterior
oneWayAOV.Fstat | Use F statistic to compute Bayes factor for balanced one-way designs
options-BayesFactor | options() for package BayesFactor
plot.BFBayesFactor | Plot a Bayes factor object
plot.BFBayesFactorTop | Plot a Bayes factor top-down object
posterior | Sample from the posterior distribution of one of several models.
posterior-method | Sample from the posterior distribution of one of several models.
priorLogodds<- | Set prior log odds in an object
priorLogodds<--method | Set prior log odds in an object
priorOdds<- | Set prior odds in an object
priorOdds<--method | Set prior odds in an object
proportionBF | Function for Bayesian analysis of proportions
puzzles | Puzzle completion times from Hays (1994)
raceDolls | Hraba and Grant (1970) children's doll preference data
recompute | Recompute a Bayes factor computation or MCMC object.
recompute-method | Recompute a Bayes factor computation or MCMC object.
regressionBF | Function to compute Bayes factors for regression designs
t-method | General S4 class for representing multiple Bayes factor model comparisons, all against the same model
t-method | General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
ttest.tstat | Use t statistic to compute Bayes factor for one- and two- sample designs
ttestBF | Function for Bayesian analysis of one- and two-sample designs
which.max-method | General S4 class for representing multiple Bayes factor model comparisons, all against the same model
which.min-method | General S4 class for representing multiple Bayes factor model comparisons, all against the same model
[-method | General S4 class for representing multiple Bayes factor model comparisons, all against the same model
[-method | General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
[-method | General S4 class for representing multiple odds model comparisons, all against the same model
[-method | General S4 class for representing multiple model probability comparisons