Package: CIDER
Type: Package
Title: Meta-Clustering for Single-Cell Data Integration and Evaluation
Version: 0.99.0
Maintainer: Zhiyuan Hu <zhiyuan.cheryl.hu@gmail.com>
Authors@R: c(
    person("Zhiyuan", "Hu", role = c("aut", "cre"),
      email = "zhiyuan.cheryl.hu@gmail.com",
      comment = c(ORCID = "0000-0002-1688-6032")
    ),
    person("Christopher", "Yau", 
      role = "aut",
      comment = c(ORCID = "0000-0001-7615-8523")
    )
  )
Description: A workflow of (a) meta-clustering based on 
    inter-group similarity measures and (b) a ground-truth-free test metric to 
    assess the biological correctness of integration in real datasets. See Hu Z,
    Ahmed A, Yau C (2021) <doi:10.1101/2021.03.29.437525> for
    more details.
URL: https://github.com/zhiyhu/CIDER, https://zhiyhu.github.io/CIDER/
BugReports: https://github.com/zhiyhu/CIDER/issues
Imports: limma (>= 3.42.0), edgeR (>= 3.28.0), stats (>= 3.6.2),
        foreach (>= 1.4.7), Seurat (>= 3.1.0), utils (>= 3.6.2),
        pheatmap (>= 1.0.0), dbscan (>= 1.1-5), kernlab (>= 0.9-29),
        doParallel, igraph, parallel, graphics, ggplot2, viridis
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.2
LazyData: true
Suggests: knitr, rmarkdown, testthat, statmod (>= 1.2.2), cowplot
Depends: R (>= 3.5.0)
NeedsCompilation: no
Packaged: 2021-11-18 21:18:27 UTC; zhiyuanhu
Author: Zhiyuan Hu [aut, cre] (<https://orcid.org/0000-0002-1688-6032>),
  Christopher Yau [aut] (<https://orcid.org/0000-0001-7615-8523>)
Repository: CRAN
Date/Publication: 2021-11-19 14:40:08 UTC
Built: R 4.0.2; ; 2021-11-20 12:25:26 UTC; unix
