# Model-Based Detection of Disease Clusters

## Documentation for package ‘DClusterm’ version 1.0-1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

brainnav | Brain cancer in males in Navarre, Spain, 1988-1994.
brainnavnb | Brain cancer in males in Navarre, Spain, 1988-1994.
brainNM | Brain cancer in New Mexico, USA, 1973-1991.
brainNM_clusters | Brain cancer in New Mexico, USA, 1973-1991.
brainst | Brain cancer in New Mexico, USA, 1973-1991.
CalcStatClusterGivenCenter | Calls the function to obtain the cluster with the maximum log-likelihood ratio or minimum DIC of all the clusters with the same center and start and end dates.
CalcStatsAllClusters | Obtains the clusters with the maximum log-likelihood ratio or minimum DIC for each center and start and end dates.
computeprob | Computes the probability that a model parameter is <=k from inla marginals
CreateGridDClusterm | Creates grid over the study area.
DetectClustersModel | Detects clusters and computes their significance.
get.allknclusters | Extract indices of the areas in the clusters detected
get.stclusters | Gets areas in a spatio-temporal cluster
glmAndZIP.iscluster | Obtains the cluster with the maximum log-likelihood ratio or minimum DIC of all the clusters with the same center and start and end dates.
knbinary | Constructs data frame with clusters in binary format.
losalamos | Brain cancer in New Mexico, USA, 1973-1991.
mergeknclusters | Merges clusters so that they are identifed as levels of a factor.
Navarre | Brain cancer in males in Navarre, Spain, 1988-1994.
nm.cl0 | Brain cancer in New Mexico, USA, 1973-1991.
nm.cl1 | Brain cancer in New Mexico, USA, 1973-1991.
nm.m0 | Brain cancer in New Mexico, USA, 1973-1991.
nm.m1 | Brain cancer in New Mexico, USA, 1973-1991.
ny.cl0 | Leukemia in an eight-county region of upstate New York, 1978-1982.
ny.cl1 | Leukemia in an eight-county region of upstate New York, 1978-1982.
ny.m0 | Leukemia in an eight-county region of upstate New York, 1978-1982.
ny.m1 | Leukemia in an eight-county region of upstate New York, 1978-1982.
NY8 | Leukemia in an eight-county region of upstate New York, 1978-1982.
NY8_clusters | Leukemia in an eight-county region of upstate New York, 1978-1982.
SelectStatsAllClustersNoOverlap | Removes the overlapping clusters.
SetVbleCluster | Constructs a variable that indicates the locations and times that pertain to a cluster.
slimknclusters | Remove overlapping clusters
TCE | Leukemia in an eight-county region of upstate New York, 1978-1982.