# Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

## Documentation for package ‘SCORPIUS’ version 1.0.8

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

SCORPIUS-package | SCORPIUS: Trajectory inference from single-cell RNA sequencing data.
draw_trajectory_heatmap | Draw time-series heatmap
draw_trajectory_plot | Visualise SCORPIUS
extract_modules | Extract modules of features
generate_dataset | Generate a synthetic dataset
gene_importances | Calculate the importance of a feature
ginhoux | scRNA-seq data of dendritic cell progenitors.
infer_initial_trajectory | Infer an initial trajectory through space
infer_trajectory | Infer linear trajectory through space
reduce_dimensionality | Dimensionality reduction
reverse_trajectory | Reverse a trajectory
SCORPIUS | SCORPIUS: Trajectory inference from single-cell RNA sequencing data.
ti_scorpius | Infer a trajectory using SCORPIUS
ti_scorpius_run_fun | Run scorpius using the dynwrap pipeline