# Multi-Omic Integration via Sparse Singular Value Decomposition

## Documentation for package ‘MOSS’ version 0.2.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

aest.f | Assign point color and shape aesthetics.
cov_adj | Adjust omic blocks for covariates effects.
metdat | Extracts (and merges) chunks of characters.
moss | Multi-Omic integration via Sparse Singular value decomposition.
moss_heatmap | Creates a heatmap from the output of MOSS.
moss_select | Returns features and subject selected by latent dimension.
moss_signatures | Returns signatures of features by groups of subjects
moss_venn | Useful Venn diagrams to study the overlap between samples row names.
pca2tsne | Mapping principal components onto a 2D map via tSNE.
prepro_na | Missing values imputation by the mean of each column.
prepro_sub | Scale and normalize columns of a matrix.
simulate_data | Simple simulation of regulatory modules.
ssvdEN | Sparse Singular Value Decomposition via Elastic Net.
ssvdEN_sol_path | 'Solution path' for sparse Singular Value Decomposition via Elastic Net.
ssvdEN_sol_path_par | 'Solution path' for sparse Singular Value Decomposition via Elastic Net using parallel computing.
tsne2clus | t-Stochastic Neighbor Embedding to Clusters