---
title: "MetricGraph Package"
author: "David Bolin, Alexandre B. Simas, and Jonas Wallin"
date: "`r Sys.Date()`"
output:
  rmarkdown::html_vignette:
    number_sections: true
vignette: >
  %\VignetteIndexEntry{MetricGraph Package}
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteEncoding{UTF-8}
references:
- id: BSW2022a
  title: "Gaussian Whittle--Matérn fields on metric graphs"
  author:
  - family: Bolin
    given: David
  - family: Simas
    given: Alexandre B.
  - family: Wallin
    given: Jonas
  container-title: Bernoulli
  type: article
  issued:
    year: 2023
- id: BSW2022b
  title: "Statistical properties of Gaussian Whittle--Matérn fields on metric graphs"
  author:
  - family: Bolin
    given: David
  - family: Simas
    given: Alexandre B.
  - family: Wallin
    given: Jonas
  container-title: arXiv:2304.10372
  type: preprint
  issued:
    year: 2023
- id: Anderes2020
  title: "Isotropic covariance functions on graphs and their edges"
  author:
  - family: Anderes
    given: Ethan
  - family: Møller
    given: Jesper
  - family: Rasmussen
    given: Jakob G
  container-title: Annals of Statistics
  type: article
  issue: 48
  pages: 2478-2503
  issued:
    year: 2020
- id: Borovitskiy2021
  title: "Matérn Gaussian processes on graphs"
  author:
  - family: Borovitskiy
    given: Viacheslav
  - family: Azangulov
    given: Iskander
  - family: Terenin
    given: Alexander 
  - family: Mostowsky
    given: Peter
  - family: Deisenroth
    given: Marc
  - family: Durrande
    given: Nicolas
  container-title: International Conference on Artificial Intelligence and Statistics
  type: article
  pages: 2593-2601
  issued: 
    year: 2021
- id: LindgrenRue2015
  title: Bayesian Spatial Modelling with R-INLA.
  author:
  - family: Lindgren
    given: Finn
  - family: Rue
    given: Haavard
  container-title: Journal of Statistical Software
  type: article
  issue: 63
  pages: 1-25
  issued:
    year: 2015
- id: inlabru2019
  title: inlabru an R package for Bayesian spatial modelling from ecological survey data
  author:
  - family: Bachl
    given: Fabian E.
  - family: Lindgren
    given: Finn
  - family: Borchers
    given: David L.
  - family: Illian
    given: Janine B.
  container-title: Methods in Ecology and Evolution
  type: article
  issue: 10
  pages: 760-766
  issued:
    year: 2019
- id: sppackage
  title: Applied spatial data analysis with R
  author:
  - family: Bivand
    given: Roger S.
  - family: Pebesma
    given: Edzer
  - family: Gomez-Rubio
    given: Virgilio
  publisher: Springer, NY
  type: book
  issued:
    year: 2013
- id: plotlypackage
  title: Interactive Web-Based Data Visualization with R, plotly, and shiny
  author:
  - family: Sievert
    given: Carson
  publisher: Chapman and Hall/CRC
  type: book
  issued:
    year: 2020
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

# Package Home Page

For more details on the package, along with a brief introduction, function references and several vignettes, go to the [`MetricGraph` home page](https://davidbolin.github.io/MetricGraph/).

For the source codes, reporting issues, etc., please go the the [`MetricGraph` GitHub page](https://github.com/davidbolin/MetricGraph).

# Vignettes

We have the following vignettes for the `MetricGraph` package:

* [MetricGraph: Random Fields on Metric Graphs](https://davidbolin.github.io/MetricGraph/articles/MetricGraph.html)

* [Working with metric graphs](https://davidbolin.github.io/MetricGraph/articles/metric_graph.html)

* [Gaussian random fields on metric graphs](https://davidbolin.github.io/MetricGraph/articles/random_fields.html)

* [Data manipulation on metric graphs](https://davidbolin.github.io/MetricGraph/articles/metric_graph_data.html)

* [Whittle--Matérn fields with general smoothness](https://davidbolin.github.io/MetricGraph/articles/fem_models.html)

* [inlabru interface of Whittle--Matérn fields](https://davidbolin.github.io/MetricGraph/articles/inlabru_interface.html)

* [INLA interface for Whittle--Matérn fields on metric graphs](https://davidbolin.github.io/MetricGraph/articles/inla_interface.html)

* [Log-Gaussian Cox processes on metric graphs](https://davidbolin.github.io/MetricGraph/articles/pointprocess.html)

# Function Manuals

Detailed references for functions including several examples can be found in the [Function References](https://davidbolin.github.io/MetricGraph/reference/index.html).
