SNPkit-package	SNPkit
as_snpmatrix	as_snpmatrix
cbind_SnpMatrix	cbind_SnpMatrix
check.call.rate	check.call.rate
check.ibs	check.ibs
check.identical.samples	check.identical.samples
check.identical.samples.by.block	check.identical.samples.by.block
check.mendelian.inconsistencies	check.mendelian.inconsistencies
check.mendelian.inconsistencies.pair	check.mendelian.inconsistencies.pair
check.sample.call.rate	check.sample.call.rate
check.sample.heterozygosity	check.sample.heterozygosity
check.snp.chromo	check.snp.chromo
check.snp.hwe	check.snp.hwe
check.snp.hwe.chi2	check.snp.hwe.chi2
check.snp.maf	check.snp.maf
check.snp.mgf	check.snp.mgf
check.snp.monomorf	check.snp.monomorf
check.snp.no.position	check.snp.no.position
check.snp.same.position	check.snp.same.position
combineSNPData	combineSNPData
doPCA	doPCA
exploratory.plots	exploratory.plots
FImputeExport-class	FImputeExport-class
FImputeRunner	FImputeRunner
FImputeRunner-class	FImputeRunner-class
genoToDF	genoToDF
get.correl.fc	get.correl.fc
get.gender	get.gender
get.hwe.chi2	get.hwe.chi2
getGeno	getGeno
getGeno,ANY-method	getGeno
ibs.pair	ibs.pair
importAllGenos	importAllGenos
importAllGenos,SNPImportList-method	importAllGenos
importFImputeResults	importFImputeResults
import_geno_list	import_geno_list
pairs2sets	pairs2sets
plotPCAgroups	plotPCAgroups
print.summary.SNPDataLong	print.summary.SNPDataLong
qcSamples	qcSamples
qcSamples,SNPDataLong-method	qcSamples
qcSNPs	qcSNPs
qcSNPs,SNPDataLong-method	qcSNPs
qc_header	qc_header
rbindSnpFlexible	rbindSnpFlexible
rbind_SnpMatrix	rbind_SnpMatrix
read.fimpute	read.fimpute
runAnticlusteringPCA	runAnticlusteringPCA
runFImpute	runFImpute
runFImpute,FImputeRunner-method	runFImpute
run_admixture	run_admixture
saveFImpute	saveFImpute
saveFImpute,FImputeExport-method	saveFImpute
saveFImpute,SNPDataLong-method	saveFImpute
saveFImputeRaw	saveFImputeRaw
savePlink	savePlink
SNPFileConfig-class	SNPFileConfig-class
SNPImportList-class	SNPImportList-class
SNPkit	SNPkit
Subset	Subset
Subset,SNPDataLong-method	Subset
summary,SNPDataLong-method	summary-SNPDataLong-method
