# Chemical Structural Similarity Analysis

## Documentation for package ‘MetChem’ version 0.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

allbranches | Cut a Tree into Groups of Data
chemical.dissimilarity | Chemical dissimilarity.
ChemRICH | ChemRICH Dataset
clusters.detection | Detection of clusters.
diseasesMet | Metabolite-associated Diseases
enzymesMet | Metabolite-associated Enzymes
features | Cluster features extraction
HFD | HFD Dataset
KODAMA.chem.sim | KODAMA chemical similarity.
Metabolites | Metabolomic Dataset
nameMet | Name of metabolites
pathwaysMet | Metabolic Pathways
propertiesMet | Physical Proprieties of metabolites
readMet | Metabolite Cards Reading
selectionMet | Metabolites selection
substituentsMet | Metabolite substituents
taxonomyMet | Metabolite Taxonomy
tree.cutting | Optimal cluster number calculation.
WMCSA | Weighted Metabolite Chemical Structural Analysis
write.cls | Write a CLS file
write.gct | Write a GCT file
write.gmt | Write a GMT file