# Protocol Inspection and State Machine Analysis

## Documentation for package ‘PRISMA’ version 0.2-7

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

PRISMA-package | Protocol Inspection and State Machine Analysis
asap | The ASAP Data Set
corpusToPrisma | Convert tm copus to PRISMA
estimateDimension | Estimate Inner Dimension
getDuplicateData | Restores Data with Duplicates
getMatrixFactorizationLabels | Convert Coordinates of Matrix Factorization to Labels
loadPrismaData | Load PRISMA Data Files
plot.prisma | Generics For PRISMA Objects
plot.prismaDimension | Generics For PRISMA Objects
plot.prismaMF | Generics For PRISMA Objects
print.prisma | Generics For PRISMA Objects
print.prismaDimension | Generics For PRISMA Objects
PRISMA | Protocol Inspection and State Machine Analysis
prismaDuplicatePCA | Matrix Factorization Based on Replicate-Aware PCA
prismaHclust | Matrix Factorization Based on Hierarchical Clustering
prismaNMF | Matrix Factorization Based on Replicate-Aware NMF
thesis | The Thesis Data Set