bedrockbio: Open-Access Computational Biology Datasets
Efficiently access the 'Bedrock Bio' library of open-access
computational biology datasets. Lazily query datasets backed by 'DuckDB'
and 'Apache Iceberg', with support for predicate pushdown and column
projection to the cloud storage backend. This enables quick, iterative
access to otherwise massive, unwieldy datasets without downloading them
in full. See <https://bedrock.bio> for available datasets and
documentation.
| Version: |
2.0.0 |
| Depends: |
R (≥ 4.2) |
| Imports: |
curl, DBI, dbplyr, dplyr, duckdb, jsonlite |
| Suggests: |
testthat (≥ 3.0.0), withr |
| OS_type: |
unix |
| Published: |
2026-07-02 |
| DOI: |
10.32614/CRAN.package.bedrockbio |
| Author: |
Liam Abbott [aut, cre, cph] |
| Maintainer: |
Liam Abbott <liam at bedrock.bio> |
| BugReports: |
https://github.com/bedrock-bio/bedrock-bio-client/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://bedrock.bio,
https://github.com/bedrock-bio/bedrock-bio-client |
| NeedsCompilation: |
no |
| Language: |
en-US |
| Materials: |
README, NEWS |
| CRAN checks: |
bedrockbio results |
Documentation:
Downloads:
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