omopgenerics dev

• Add cohort name to attrition and cohortCount functions by @catalamarti in #836

omopgenerics 1.4.0

• Create importCodelistWithDetails and exportCodelistWithDetails by @catalamarti in #839
• Provide better error message by @catalamarti in #834
• Use type = NULL (json + csv) by default in inport function by @catalamarti in #841
• Add methods for cdm_table (read, drop, insert, list, indexes) by @catalamarti in #837
• Assign method for cdmName by @catalamarti in #833
• Change casted to cast by @ablack3 in #814
• Allow uniqueId(n = 0) to work by @catalamarti in #842
• Add integerish argument to validateWindowArgument by @catalamarti in #844
• Create filterResult function by @catalamarti in #845
• Add argument nm to assert and validate functions to allow naming of the input by @catalamarti in #847
• Add null = FALSE argument to validateColumn by @catalamarti in #848
• Correct message for cohort_end_date < cohort_start_date by @catalamarti in #851
• Add recursive = FALSE option to import Concepts functions by @catalamarti in #854
• Create empty argument for assert and validate functions by @catalamarti in #849
• Attributes of cohort_table are not collected if not needed by @catalamarti in #857
• Create readOnly source by @catalamarti in #858
• Create compareOmopTableFields function by @catalamarti in #859
• Register result type by @catalamarti in #781
• Allow to validate codelists with the cdm by @catalamarti in #843
• Allow tidy expressions and negate expressions to work for dropSourecTable, readSourceTable, getCohortId functions by @catalamarti in #850
• Fix issues with NA in summarised_result by @catalamarti in #860
• Consistent documentation of arguments by @catalamarti in #855
• spell check by @catalamarti in #862
• add code_search by @catalamarti in #864

omopgenerics 1.3.7

• Correct typo in import concept set expression in tibble format by @catalamarti in #808
• Correctly handle different cdm versions by @catalamarti in #811, #812

omopgenerics 1.3.6

• Allow codelist and concept set import in tibble format by @catalamarti in #806

omopgenerics 1.3.5

• Eliminate repeated elements from codelists by @catalamarti in #800
• Add methods for empty concept sets by @catalamarti in #802
• Add log query to collect by @catalamarti in #804

omopgenerics 1.3.4

• Handle edge case in concept set expression import by @catalamarti in #793
• Add elapsed time calculation to log summary by @catalamarti in #795
• Remove specimen_source_concept_id from fieldTablesColumns by @catalamarti in #797
• Add methods for concept classes by @catalamarti in #796

omopgenerics 1.3.3

• Add unique argument to assertLogical() by @catalamarti in #782
• Fix non UTF-8 issues (any collected character non UTF-8 is eliminated) by @catalamarti in #778
• concept set to also import codelists by @catalamarti in #787
• logging explain is now TRUE/FALSE option to add in the same log file by @catalamarti in #785

omopgenerics 1.3.2

• Fix typo in compute timing by @edward-burn in #763
• Add stable badge by @catalamarti in #769
• Allow extraction of all codelists of a cohort with cohortCodelist() by @catalamarti in #770
• Export SQL and explain SQL can be added to the result object by @catalamarti in #765
• Create as_tibble() method for concept_set_expression by @catalamarti in #774
• newConceptSetExpression() accepts codelists as inputs by @catalamarti in #773
• exportConceptSetExpression() exports codelists as concept_set_expression by @catalamarti in #773

omopgenerics 1.3.1

• The time a query takes to compute is included in the log file by @edward-burn in #737
• Create emptyConceptSetExpression function by @edward-burn #735
• Empty codelist has class codelist by @edward-burn in #734
• Correct typo for condition_era_id by @catalamarti in #727
• Add … argument to insertTable by @catalamarti in #725
• observation_period and person are no longer required in the cdm object @catalamarti #746
• Create function omopDataFolder() for the management of OMOP related data @catalamarti #747
• Remove tictoc from suggests and use base R by @catalamarti #748
• Support end and start date for table payer_plan_period by @catalamarti #749
• validate cohortId in recordCohortAttrition by @catalamarti #750
• Add separate vignette for suppression by @catalamarti #751
• Depend on dbplyr 2.5.1 to be able to use the new translations of clock by @catalamarti #754
• Add methods to support local datasets by @catalamarti in #757
• Cast columns for local cdms by @catalamarti #758

omopgenerics 1.3.0

• Write method for summary.cdm_source by @catalamarti in #719 #720
• Add query id in logging files by @catalamarti in #716
• Expanding omopgenerics vignette by @catalamarti in #721
• Indexes experimental functions by @catalamarti in #722 #723 #724

omopgenerics 1.2.0

• Remove NA in estimates in transformToSummarisedResult by @catalamarti in #702
• Create logging functions by @catalamarti in #700
• Allow strata to be a character by @catalamarti in #703
• Remove settings that are NA after filterSettings by @catalamarti in #704
• validateWindowArgument force snake_case names by @catalamarti in #711
• Keep cohort_table class after collect by @catalamarti in #710
• dplyr::as_tibble for codelist by @catalamarti in #712
• type -> codelist_type by @catalamarti in #709

omopgenerics 1.1.1

• more general validation for cohorts by @edward-burn in #692
• change grepl to stringr::str_detect by @catalamarti in #689
• allow readr::guess_encoding to fail and default configuration by @catalamarti in #685
• keep codelist class when subsetting by @catalamarti in #693
• export summarised_results always as utf8 by @catalamarti in #690
• add option checkPermanentTable to validateCohortArgument by @catalamarti in #694

omopgenerics 1.1.0

• more general cdm validation checks by @edward-burn in #674
• typo in validateConceptSet by @catalamarti in #673
• fix call argument by @catalamarti in #677
• fix tempdir(“…”) by @catalamarti in #679
• new function transformToSummarisedResult by @catalamarti in #676

omopgenerics 1.0.0

• Stable release of the package.
• Added a NEWS.md file to track changes to the package.